NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302321_100059774

Scaffold Ga0302321_100059774


Overview

Basic Information
Taxon OID3300031726 Open in IMG/M
Scaffold IDGa0302321_100059774 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3703
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027031Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0302321_1000597746F027031AGGCGGMLAGYPARMTTTWRTLALLYPVMDAKYGSGLGRGHARRVMGRDERAAIERILETLPAIVESWSDGLATMAPLDVIEVRRSIRSLSSSGGGRWWVAPRECRDELESFVAPDRYDSIYALWPGDPSIPQCGWGCTLGPGEATFGAGFSSISTDHWATLATDPDPAQGYVHEWLHQVESVYRTFGVDEATLPGLHDAGDYTSTRSTAEPPFGRSYADYHDGRGTGQAPARTWSPWYRDWMTGRLQPVGGAAAVGVGTGGVAAGRATEERLAIGLTPKRWALRGR

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